##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index18_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18771891	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.180930786354985	33.0	31.0	34.0	31.0	34.0
2	32.41362971903044	34.0	31.0	34.0	31.0	34.0
3	32.42453980795009	34.0	31.0	34.0	31.0	34.0
4	36.07505077671717	37.0	35.0	37.0	35.0	37.0
5	35.96413739031406	37.0	35.0	37.0	35.0	37.0
6	35.9409748330629	37.0	35.0	37.0	35.0	37.0
7	35.9300434889591	37.0	35.0	37.0	35.0	37.0
8	35.89161907023645	37.0	35.0	37.0	35.0	37.0
9	37.58819742773917	39.0	37.0	39.0	35.0	39.0
10-14	37.82506837483768	39.2	37.2	39.4	35.0	39.4
15-19	38.76431586993553	40.0	38.0	41.0	34.6	41.0
20-24	38.5755159988943	40.0	38.0	41.0	34.0	41.0
25-29	38.231190762827254	40.0	38.0	41.0	33.6	41.0
30-34	38.18987608653811	40.0	38.0	41.0	33.2	41.0
35-39	37.89423481097349	40.0	37.0	41.0	33.0	41.0
40-44	37.78687908426487	40.0	37.0	41.0	33.0	41.0
45-49	37.41212395703768	39.4	35.8	41.0	31.6	41.0
50-54	36.787549970325315	38.8	35.0	40.4	31.0	41.0
55-59	36.078721978515645	37.8	34.6	40.0	29.8	41.0
60-64	35.23526336265216	36.6	34.0	39.6	28.6	41.0
65-69	34.291107624692685	35.2	33.0	38.8	27.6	40.4
70-74	33.200965720502	35.0	32.2	37.2	26.0	39.4
75-79	32.151837308239216	34.2	31.2	35.8	25.0	38.4
80-84	31.520879606641653	34.0	31.0	35.0	24.2	36.8
85-89	30.250332947277393	34.0	30.4	35.0	16.0	35.8
90	29.16188869837354	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	15.0
12	122.0
13	857.0
14	4133.0
15	10903.0
16	19344.0
17	27589.0
18	35185.0
19	43003.0
20	51887.0
21	61112.0
22	71473.0
23	84231.0
24	102128.0
25	126827.0
26	160427.0
27	205665.0
28	263859.0
29	334862.0
30	419585.0
31	527339.0
32	663951.0
33	857160.0
34	1161493.0
35	1672747.0
36	2563734.0
37	3650703.0
38	3849297.0
39	1781259.0
40	21000.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.309773006098958	12.561561896487964	9.670376700906704	53.45828839650637
2	21.682438203459885	18.935960249811124	36.50421659535741	22.877384951371578
3	25.552146025139393	21.442416216885128	22.580143897063966	30.425293860911506
4	27.799415626268022	27.475915985235584	19.275079958646682	25.44958842984972
5	29.474817371869182	29.59605716824769	21.394964566432286	19.534160893450842
6	24.434991658538824	32.429700342922295	21.884667879224313	21.250640119314564
7	21.776319711210768	18.678352649714405	37.10152589315589	22.443801745918936
8	21.560283937297527	21.8896913475579	29.35435220671162	27.195672508432956
9	21.62675033644719	20.83926440868424	31.712931851138492	25.821053403730076
10-14	24.82799628444465	25.977002530006168	24.447389983246758	24.747611202302423
15-19	25.25295933158785	24.930208682758707	24.782542153052134	25.03428983260131
20-24	25.04085603309757	25.158363640615644	25.177861942624745	24.62291838366204
25-29	24.901507367315514	25.149922687378602	25.122050957045005	24.826518988260876
30-34	24.99865621225908	25.074022327961583	25.016279675507942	24.9110417842714
35-39	24.984661873514792	25.228154065440705	24.984759896030926	24.802424165013576
40-44	24.954500753810336	25.029857282127505	25.169564175097094	24.84607778896507
45-49	24.873351051336822	25.11121377785091	25.061487106203906	24.953948064608365
50-54	24.942422058117767	25.182068154087638	25.08791930434702	24.787590483447566
55-59	24.96357630080032	25.10491767378304	25.038477351770737	24.893028673645905
60-64	24.866914030163166	25.12741738729474	25.15140112220781	24.854267460334277
65-69	24.91087146042059	25.239553559406406	25.132792792827345	24.716782187345654
70-74	24.953644155202102	25.160079868391893	25.035299357302378	24.850976619103633
75-79	24.94408979403569	25.12310729374743	25.107547410603814	24.825255501613064
80-84	24.85299172641535	25.262614334870324	25.118410538942033	24.765983399772296
85-89	24.976184934422776	25.25234380625147	25.005346869772925	24.766124389552825
90	24.671793023668982	25.37262776804233	25.210436075958302	24.745143132330384
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.76806140260533
2	44.55982315483146
3	55.9774398860509
4	53.249004056117734
5	49.008978265320025
6	45.68563177785339
7	44.22012145712971
8	48.75595644573048
9	47.44780374017727
10-14	49.575607486747074
15-19	50.28724916418916
20-24	49.66377441675961
25-29	49.7280263555764
30-34	49.909697996530475
35-39	49.787086038528365
40-44	49.80057854277541
45-49	49.82729911594518
50-54	49.73001254156533
55-59	49.85660497444622
60-64	49.72118149049744
65-69	49.627653647766245
70-74	49.80462077430573
75-79	49.769345295648755
80-84	49.61897512618764
85-89	49.742309323975604
90	49.416936155999366
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	4.0
1	2.0
2	0.0
3	1.5
4	3.0
5	2.5
6	2.5
7	7.0
8	15.0
9	34.5
10	50.0
11	56.0
12	93.0
13	158.0
14	278.5
15	462.5
16	815.5
17	1413.0
18	2420.0
19	4357.0
20	5629.0
21	7565.5
22	12665.0
23	20672.0
24	31974.5
25	47562.5
26	68355.5
27	95261.0
28	125315.0
29	157666.5
30	175206.0
31	191739.5
32	228072.0
33	270226.0
34	315414.5
35	358741.5
36	401556.0
37	451299.5
38	496491.5
39	532216.0
40	550171.0
41	562264.5
42	587035.0
43	611005.0
44	626646.5
45	632722.0
46	633534.5
47	632354.0
48	634495.0
49	636730.5
50	636559.0
51	632143.0
52	628615.5
53	622516.0
54	620103.5
55	623741.5
56	618104.0
57	608193.5
58	591939.0
59	569442.5
60	557990.0
61	544303.0
62	514577.0
63	476419.5
64	430431.5
65	382557.0
66	333986.5
67	283778.0
68	237417.5
69	193696.5
70	170693.0
71	150808.5
72	113954.5
73	82806.5
74	56484.0
75	35296.0
76	20732.5
77	11251.0
78	5203.0
79	2166.5
80	1216.0
81	870.5
82	358.0
83	133.5
84	58.0
85	33.5
86	20.0
87	14.5
88	11.5
89	7.0
90	7.0
91	5.0
92	2.5
93	3.0
94	2.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.1737757799680384
2	0.05175823788876677
3	0.0
4	0.0
5	1.0654227642809134E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	9.716655610241931E-4
30-34	0.0017323774147207653
35-39	0.003694886146526208
40-44	0.003148324268450099
45-49	0.002534640756224293
50-54	0.013123877610412291
55-59	0.0024440798212604156
60-64	1.2785073171370962E-5
65-69	7.351417073538303E-5
70-74	0.005385712073440018
75-79	0.0028862302684369945
80-84	6.626929593827281E-4
85-89	8.534036341890116E-4
90	0.0014702834147076605
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8771891E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.25352403152084
#Duplication Level	Relative count
1	100.0
2	30.555584055814908
3	15.709228953983482
4	9.691684194326168
5	6.50695121325604
6	4.866362283896783
7	3.7757143590006668
8	2.9918432257733545
9	2.367003539732212
10++	28.73749551120915
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4104380	2.612782	5.312778	1
CCTGG	4095505	2.5935762	5.869422	1
GAAGA	3949815	2.5466053	5.123042	2
CTTCT	4074665	2.541787	6.048033	1
AAGAA	3933470	2.5301867	5.172317	2
CTGGA	3857565	2.4584959	9.119066	1
TCCAG	3750350	2.3694916	5.6820755	2
CTGCT	3726715	2.3423162	5.2777133	1
CTCCT	3724120	2.3204393	7.6647077	1
CTGGG	3521770	2.2497041	8.544563	1
CAGGA	3502620	2.2439504	5.4494057	1
CTTCA	3529320	2.2131062	6.1415243	1
CTCCA	3471795	2.1745265	8.030817	1
CCCAG	3399505	2.1453516	7.059781	1
CAGAA	3236155	2.0684326	5.12801	1
CTCTG	3190325	2.0051844	6.7513895	1
CTTCC	3144370	1.9592065	5.0352507	1
CTGGC	2996520	1.8976178	5.558049	1
TGGAA	2900410	1.8602883	5.2641606	2
CTGAA	2900405	1.8441943	5.8822484	1
CTTTT	2888730	1.8040757	5.4322567	1
CTCAG	2734255	1.7275172	6.5332003	1
CTGAG	2706160	1.7246846	5.1629114	1
CTTTG	2713425	1.70741	5.41477	1
CTGGT	2657885	1.6851103	5.278955	1
CTTGG	2578165	1.6345676	5.6789346	1
>>END_MODULE
